Spatial-Live
Installation & Usage
Installation
Usage
User Guide
A quick demo
Variable types and visual layers
Input files
Concise control interface
Tooltip and image export
Data Preparation Tutorial - Kidney Visium
Python virtual environment setup
10X Visium spatial data preparation
Preprocessing and quality control
Highly variable genes and leiden clustering
Preparing input files for Spatial-Live
Geometric Json file
Data Preparation Tutorial - Liver Vizgen
Python virtual environment setup
Vizgen MERFISH Mouse Liver data preparation
Base Image Preprocessing
Data preprocessing and quality control
Spatial Distributions of Cells
Assign Cell Types
Hepatocyte Zonation: Peri-Portal and Peri-Central zones
Preparing input files for Spatial-Live
A screen snapshot from Spatial-Live
Spatial-Live
Index
Index