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  • Installation & Usage
    • Installation
    • Usage
  • User Guide
    • A quick demo
    • Variable types and visual layers
    • Input files
    • Concise control interface
    • Tooltip and image export
  • Data Preparation Tutorial - Kidney Visium
    • Python virtual environment setup
    • 10X Visium spatial data preparation
    • Preprocessing and quality control
    • Highly variable genes and leiden clustering
    • Preparing input files for Spatial-Live
    • Geometric Json file
  • Data Preparation Tutorial - Liver Vizgen
    • Python virtual environment setup
    • Vizgen MERFISH Mouse Liver data preparation
    • Base Image Preprocessing
    • Data preprocessing and quality control
    • Spatial Distributions of Cells
    • Assign Cell Types
    • Hepatocyte Zonation: Peri-Portal and Peri-Central zones
    • Preparing input files for Spatial-Live
    • A screen snapshot from Spatial-Live
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